In 1960 what should have been done was to ask Cypriots to decide the future of their own country with a democratic referendum.
According to the UN resolution about decolonzation the available options for Cypriots should have been:
http://www.un.org/Depts/dpi/decolonizat ... ration.htm
1) free association with an independent State
2) integration into an independent State
3) independence
Not only this option was not given to the Cypriot people but they were not even allowed to write their own constidution. In a few words Cyprus was never liberated. On the contrary the 1960 agreements were forced upon Greek Cypriots, actually they were forced upon Makarios (the Cypriot leader) since Cypriots themselves were not even asked if they approve those agreements or not.
Those agreements were unfair for Greek Cypriots in that they granted to the 18% of the TC minority 30% of governmental jobs, 40% of the police force, veto powers on many issues etc.
When the government was not able to fill the 30% of governmental positions with TCs, the TCS retaliated by using their veto power to block the budget from being approved and they did everything they could to create even more problems making the government impossible to function.
The TCs were trying to make the 1960 agreements collapse so they could achieve their partition dream.
This was the environment that forced some GCs to write the Akritas plan. Not to "annihilate TCs" or anything like that (I hope you read the plan itself to see that there is nothing like that in it) but to bring to Cyprus what was the right of Cypriots in the first place but was refused to them by the colonialists.
Therefore the conclusion is, as they say in a popular song "discrimination generates hate" and unfortunately in Cyprus since the time of the Ottomans Cypriots were discriminated based on high class Muslims and low class Christians.
GCs hoped that independence would finally mean that all Cypriots would be equal and that after the Turks running the island for 300 years, and after the British running the country for more than one century, that finally the island would be able to be run by its own citizens in a democratic way the way it happens in UK, France, Greece, Turkey, Sweeden, USA and all the other democratic countries in the whole world.
The insistence of some in racist discriminations and foreign rule of Cyprus is the Cyprus problem that will be solved when finally Cyprus becomes a normal democratic country like all the rest, without racist discriminations and foreign interventions.
If Cypriots are for once more forced to accept something unfair because it suits the interests of some outsiders (e.g Annan plan) that would not be the solution but only part of the problem and the circle of blood.